PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00139.1_g00035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 246aa    MW: 28059.3 Da    PI: 4.7264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00139.1_g00035.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1959110156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              s ykG+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+l+g+
  Rsa1.0_00139.1_g00035.1  59 SEYKGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRLRGA 110
                              569*******.**********72....46**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2259118IPR016177DNA-binding domain
CDDcd000187.91E-3059118No hitNo description
PfamPF008471.0E-1260109IPR001471AP2/ERF domain
PROSITE profilePS5103223.86860117IPR001471AP2/ERF domain
SMARTSM003803.3E-3660123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3060118IPR001471AP2/ERF domain
PRINTSPR003678.8E-116172IPR001471AP2/ERF domain
PRINTSPR003678.8E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MCGGAVISDY TAPPRSWRRD DVVDLTLDDL EGESQYCYPW LGMKREDGKR RRRKKSISSE  60
YKGIRRRPWG RWAAEIRDPI KGVRVWLGTF NTAEDAARAY DLEAKRLRGA KAKLNFPNES  120
SSRKRKASSS SLQPPQQQPQ VQKVEEEEDL GGCLDFLWEE NNNEDTAQVD TQWLEDVILG  180
DAAEKRQKGC YDCGADVNGL LSDELLAFEN QTECFSQMPF MERRNCGSST SLSSLLDEVN  240
VMDLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2160117563ATERF1
3gcc_A2e-2160117563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853KRRRRK
24854KRRRRKK
34866KRRRRKKSISSEYKGIRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701258.11e-125PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T53e-81ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3D0391e-122A0A0D3D039_BRAOL; Uncharacterized protein
STRINGBra016063.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.31e-78ERF family protein